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author Petar Petrov <petar.petrov@student.oulu.fi>2014-04-09 17:19:20 +0700
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2014-04-09 17:19:20 +0700
commit488f7c2161fe9b6d89651352992ba8ab7121759f (patch)
treee006fc13856eaced5625b996a9bbef98ce83e271 /academic
parent284a215b9f94b38d2b65524135f550721ec62429 (diff)
downloadslackbuilds-488f7c2161fe9b6d89651352992ba8ab7121759f.tar.gz
slackbuilds-488f7c2161fe9b6d89651352992ba8ab7121759f.tar.xz
academic/vcftools: Updated for version 0.1.12a.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/vcftools/make.patch17
-rw-r--r--academic/vcftools/slack-desc2
-rw-r--r--academic/vcftools/vcftools.SlackBuild11
-rw-r--r--academic/vcftools/vcftools.info6
4 files changed, 20 insertions, 16 deletions
diff --git a/academic/vcftools/make.patch b/academic/vcftools/make.patch
index f7cc48b93d..7c3ff55deb 100644
--- a/academic/vcftools/make.patch
+++ b/academic/vcftools/make.patch
@@ -1,15 +1,18 @@
-Description: do not use MAKEFLAGS
+Description: do not use MAKEFLAGS and not MANDIR
Author: Thorsten Alteholz <debian@alteholz.de>
-Last-Update: 2011-07-03
-Index: vcftools-0.1.7/Makefile
+Last-Update: 2014-04-03
+Index: vcftools_0.1.12/Makefile
===================================================================
---- vcftools_0.1.7.org/Makefile 2011-07-04 15:22:33.000000000 +0200
-+++ vcftools_0.1.7/Makefile 2011-07-04 15:22:56.000000000 +0200
-@@ -22,7 +22,7 @@
+--- vcftools_0.1.12.orig/Makefile 2014-04-04 10:37:59.000000000 +0200
++++ vcftools_0.1.12/Makefile 2014-04-04 10:38:34.000000000 +0200
+@@ -25,9 +25,8 @@
+
DIRS = cpp perl
install:
- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
+- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \
+- cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \
- for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done
++ @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
+ for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done
clean:
diff --git a/academic/vcftools/slack-desc b/academic/vcftools/slack-desc
index a15655731f..6589ecf88c 100644
--- a/academic/vcftools/slack-desc
+++ b/academic/vcftools/slack-desc
@@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some
vcftools: basic population genetic statistics.
vcftools:
vcftools: Home: http://vcftools.sourceforge.net/
-vcftools: References: /usr/doc/vcftools-0.1.11/References
+vcftools: References: /usr/doc/vcftools-0.1.12a/References
vcftools:
diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild
index 506bba88d1..4c69a76a95 100644
--- a/academic/vcftools/vcftools.SlackBuild
+++ b/academic/vcftools/vcftools.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for vcftools
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=vcftools
-VERSION=${VERSION:-0.1.11}
+VERSION=${VERSION:-0.1.12a}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -83,6 +83,9 @@ CPPFLAGS="$SLKCFLAGS" \
PREFIX=$PKG/usr \
make install
+# Copy man page
+install -D -m644 cpp/vcftools.1.gz $PKG/usr/man/man1/vcftools.1.gz
+
# Copy examples
mkdir -p $PKG/usr/share/$PRGNAM
cp -a examples $PKG/usr/share/$PRGNAM
@@ -91,9 +94,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
- README.txt perl/ChangeLog website/*.pdf \
- $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a README.txt perl/ChangeLog website/*.pdf $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info
index b754295189..77a7dab1c5 100644
--- a/academic/vcftools/vcftools.info
+++ b/academic/vcftools/vcftools.info
@@ -1,8 +1,8 @@
PRGNAM="vcftools"
-VERSION="0.1.11"
+VERSION="0.1.12a"
HOMEPAGE="http://vcftools.sourceforge.net/"
-DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.11.tar.gz"
-MD5SUM="ddb49e9fa2bfedae36b4dce163adfaa8"
+DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.12a.tar.gz"
+MD5SUM="ca2ab768ed741623263dbe123cac428b"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""