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* academic/free42: Fixed md5sum Panagiotis Nikolaou28 hours1-1/+1
* academic/gretl: Fixed md5sums of pdf files Panagiotis Nikolaou28 hours1-2/+2
* academic/maxima: Updated for version 5.38.1. Glenn Becker6 days2-10/+10
* academic/calc: Updated for version 2.12.5.4. Glenn Becker6 days2-4/+4
* academic/coq: Updated for version 8.5pl1. Matteo Bernardini10 days2-4/+4
* academic/jalview: Remove p7zip dep. Petar Petrov2016-07-173-13/+6
* academic/gcompris: Update DOWNLOAD url. John Sweeney2016-07-071-1/+1
* academic/GeoGebra: Updated for version 5.0.253.0. Willy Sudiarto Raharjo2016-06-272-4/+4
* academic/R: Updated for version 3.3.1. Willy Sudiarto Raharjo2016-06-252-4/+4
* academic/ugene: Update DEP and patched for GCC. Willy Sudiarto Raharjo2016-06-243-1/+67
* gis/spatialite_gui: Moved from academic/ category. David Spencer2016-06-114-127/+0
* gis/spatialite-tools: Moved from academic/ category. David Spencer2016-06-104-142/+0
* gis/opengrads: Moved from academic/ category. David Spencer2016-06-106-122/+0
* gis/TauDEM: Moved from academic/ category. David Spencer2016-06-104-144/+0
* academic/Xyce: Updated for version 6.5. David Spencer2016-06-092-8/+8
* academic/vcftools: Fix DOWNLOAD. David Spencer2016-06-083-10/+9
* academic/Xyce: Updated for version 6.4. David Spencer2016-06-082-27/+28
* academic/zotero: Updated for version 4.0.29.5 Petar Petrov2016-06-052-6/+6
* academic/vcftools: Updated for version 0.1.14_12_gcdb80b8 Petar Petrov2016-06-053-7/+7
* academic/ugene: Updated for version 1.22.0 Petar Petrov2016-06-054-13/+17
* academic/tophat: Updated for version 2.1.1 Petar Petrov2016-06-054-51/+9
* academic/spades: Updated for version 3.7.1 Petar Petrov2016-06-053-5/+5
* academic/seaview: Updated for version 4.6 Petar Petrov2016-06-054-10/+10
* academic/primer3: Updated for version 2.3.7 Petar Petrov2016-06-053-6/+6
* academic/pamlX: Updated against paml 4.9a Petar Petrov2016-06-052-4/+12
* academic/paml: Updated for version 4.9a Petar Petrov2016-06-053-6/+6
* academic/mafft: Updated for version 7.273 Petar Petrov2016-06-054-9/+9
* academic/ImageJ: Updated for version 1.50 Petar Petrov2016-06-052-5/+5
* academic/ij-plugins-LOCI: Updated for version 5.1.9 Petar Petrov2016-06-052-4/+4
* academic/gchemutils: Updated for version 0.14.12 Petar Petrov2016-06-052-4/+4
* academic/fastqc: Updated for version 0.11.5 Petar Petrov2016-06-052-5/+5
* academic/cutadapt: Updated for version 1.9.1 Petar Petrov2016-06-053-5/+5
* academic/cistrome-mdseqpos: Added (Cistrome mdseqpos) Petar Petrov2016-06-054-0/+140
* academic/cistrome-extra: Added (Cistrome extra apps) Petar Petrov2016-06-054-0/+139
* academic/cistrome-conductGO: Added (find the highest expressed TFs) Petar Petrov2016-06-055-0/+133
* academic/bwa: Updated for version 0.7.13 Petar Petrov2016-06-053-5/+5
* academic/bedGraphToBigWig: Added (Convert bedGraph to bigWig file) Petar Petrov2016-06-054-0/+102
* academic/paml: Fix DOWNLOAD. David Spencer2016-06-031-1/+1
* academic/squizz: Update MD5SUM. David Spencer2016-06-031-1/+1
* academic/sword-data-kjv: Update MD5SUM. David Spencer2016-06-031-1/+1
* academic/xephem: Updated for version 3.7.7. David Spencer2016-06-032-4/+4
* academic/ncbi-blast: Fix DOWNLOAD. David Spencer2016-06-031-2/+2
* academic/ktikz: Fix HOMEPAGE and DOWNLOAD. David Spencer2016-06-031-2/+2
* academic/fet: Fix DOWNLOAD. David Spencer2016-06-031-1/+1
* academic/armadillo: Updated for version 7.100.3. David Spencer2016-06-032-19/+5
* academic/antiprism: Fix DOWNLOAD. David Spencer2016-06-031-1/+1
* academic/spades: Fix invalid chars in desc. Matteo Bernardini2016-05-271-1/+1
* academic/mafft: Fix invalid chars in desc. Matteo Bernardini2016-05-272-4/+4
* academic/R: Updated for version 3.3.0. Willy Sudiarto Raharjo2016-05-202-4/+4
* academic/sage: Updated for version 7.2. Willy Sudiarto Raharjo2016-05-202-4/+4