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14.1 > Academic > bowtie2 (2.1.0)

Bowtie 2 is an ultrafast and memory-efficient tool for aligning
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.

Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.

Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence

Homepage:
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

Source Downloads:
bowtie2-2.1.0-source.zip (1d10f079d6dd560320f0309bd70f6080)

Download SlackBuild:
bowtie2.tar.gz
bowtie2.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:
README
References
bowtie2.SlackBuild
bowtie2.info
slack-desc

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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