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14.1 > Academic > cistrome-CEAS (1.0.2)

CEAS: Cis-regulatory Element Annotation System

This is a tool designed to characterize genome-wide protein-DNA
interaction patterns from ChIP-chip and ChIP-Seq of both sharp and
broad binding factors. As a stand-alone extension of our web
application CEAS, it provides statistics on ChIP enrichment at
important genome features such as specific chromosome, promoters, gene
bodies, or exons, and infers genes most likely to be regulated by a
binding factor. CEAS also enables biologists to visualize the average
ChIP enrichment signals over specific genomic features, allowing
continuous and broad ChIP enrichment to be perceived which might be
too subtle to detect from ChIP peaks alone.

A recommended package to install is R.

Maintained by: Petar Petrov
Keywords: biology,ChIP,cistrome

Homepage:
http://liulab.dfci.harvard.edu/CEAS/

Source Downloads:
CEAS-Package-1.0.2.tar.gz (faf202ff613794ab9cd07f282c6e2663)

Download SlackBuild:
cistrome-CEAS.tar.gz
cistrome-CEAS.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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