This script is for Slackware 14.1 only and may be outdated.

SlackBuilds Repository

14.1 > Academic > jalview (2.9)

Jalview - A Sequence Alignment Editor and Viewer

Jalview is a free program developed for the interactive editing,
analysis and visualization of multiple sequence alignments (MSA). It
can also work with sequence annotation, secondary structure
information, phylogenetic trees and 3D molecular structures.

If you use Jalview 2 in your work, please cite:
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009)
Jalview Version 2-a multiple sequence alignment editor and analysis
workbench. Bioinformatics 25: 1189-1191.

The silly requirement of p7zip is just for extracting the program's
contents at build time. You do not need it in order to use Jalview
later on, but it's a nice tool to have anyways... ;)

The 'source' is hosted at SourceForge by the SlackBuild maintainer.

This requires: p7zip, jdk

Maintained by: Petar Petrov
Keywords: phylogeny,sequence,biology,bioinformatics
ChangeLog: jalview


Source Downloads:
TheJalviewTutorial_screen.pdf (5e2f8da8f2528049f055263aecd2f8af)
install-jalview.bin (5de4a0daa112e8b6673985aef373bfdd)

Download SlackBuild:
jalview.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.1

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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