SlackBuilds Repository

14.1 > Academic > staden (2.0.0b10)

The programs part of the Staden package provide an excellent and fully
developed set of DNA sequence assembly, editing, analysis and more.

Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
search, experiment suggestion, read pair analysis and contig
GAP5 - The new development version of Gap4, designed to work with the
large volumes of data attainable through the newer sequencing
PREGAP4 - Provides a graphical user interface to set up the processing
required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
results graphically and has a sliding sequence window linked to
the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
trace files.

For more information and citing, visit Staden's web page and check the
"References" file in the documentation.

This requires: io_lib, tklib

Maintained by: Petar Petrov
Keywords: staden,staden package,io_lib,bioinformatics,biology,science,sequence analysis


Source Downloads:
staden-2.0.0b10-src.tar.gz (81ad0b840253774e41d3089fca7af688)

Download SlackBuild:
staden.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

© 2006-2015 Project. All rights reserved.
Slackware® is a registered trademark of Patrick Volkerding
Linux® is a registered trademark of Linus Torvalds
Web Design by WebSight Designs |  Managed Hosting by OnyxLight Communications