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14.2 > Academic > amplifx (1.7.0)

AmplifX: Manage, test and design your primers for PCR.

The main purpose of AmplifX is to seek in a collection of primers,
such as any molecular biologist get in his refrigerators, those which
can be use to amplify a fragment into a target sequence, for example,
and particularly, to design strategies to screen recombinant clones by
PCR. Main features:

Manage your primers
- Import or easily create primer lists
- Name,comment, sort primers
- Share simply primer lists (automatic lockout in read only mode of
files yet opened by an other user)
- Automatic calculation of quality score (TM [Santa-Lucia method],
length, GC%, autodimer, complexity, etc.)
- Works with degenerate sequences

Test your primers
- Localise your primers on target sequences (main file formats
supported and "intelligent" copy-paste)
- Prediction of amplified sequences
- Interactive graphic map
- Pertinent informations on matches and amplicons (TM, size, predicted
dimers, etc.)

Design your primers
- Simple and intuitive interface to design new primers for amplifying
a fragment choosing the amplicon size and/or the position
- Many of design options

NOTE:
This is just repackaging of the ready binary for x86 and will not run
on x86_64. It will probably work fine on a Slackware multilib box.

How to cite AmplifX:
AmplifX X.X.X [version number] by Nicolas Jullien; CNRS, Aix-Marseille
Universite - http://crn2m.univ-mrs.fr/pub/amplifx-dist

Maintained by: Petar Petrov
Keywords: amplifx,pcr,primers,epcr,biology,dna,sequences

Homepage:
http://crn2m.univ-mrs.fr/AmplifX

Source Downloads (32bit):
AmplifX_Lin_Latest.zip (ff84d1c4a800dcb651beaa877ff7b1ca)

Download SlackBuild:
amplifx.tar.gz
amplifx.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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