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14.2 > Academic > archaeopteryx (0.9920_beta)

Archaeopteryx: visualise, analyse and edit phylogenetic trees

Archaeopteryx is a software tool for the visualization, analysis, and
editing of potentially large and highly annotated phylogenetic trees.
Archaeopteryx (the successor to ATV) is entirely written in the Java
programming language and is based on the forester libraries.

Check /usr/share/archaeopteryx for an example configuration file (called
'_aptx_configuration_file.txt' or get one from the program's web-site).

Please cite:
Han M.V. and Zmasek C.M. (2009)
phyloXML: XML for evolutionary biology and comparative genomics
BMC Bioinformatics, 10:356.

This requires: jdk

Maintained by: Petar Petrov
Keywords: phylogeny,biology,sequence,phylogenetic tree

Homepage:
https://sites.google.com/site/cmzmasek/home/software/archaeopteryx

Source Downloads:
forester_1045.jar (99b8bbb7a7763ca999a7056398637d8c)

Download SlackBuild:
archaeopteryx.tar.gz
archaeopteryx.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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