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14.2 > Academic > bwa (0.7.15)

Burrows-Wheeler Aligner (BWA) is an efficient program that aligns
relatively short nucleotide sequences against a long reference sequence
such as the human genome. It implements two algorithms, bwa-short and
BWA-SW. The former works for query sequences shorter than 200bp and the
latter for longer sequences up to around 100kbp. Both algorithms do
gapped alignment. They are usually more accurate and faster on queries
with low error rates.

A configuration file ("_aptx_configuration_file") will be used if it is
in your $HOME. An example configuration file is available in
/usr/share/archeopteryx.

If you use BWA-SW, please cite:
Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
Burrows-Wheeler Transform. Bioinformatics, Epub.

Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence

Homepage:
http://bio-bwa.sourceforge.net/

Source Downloads:
bwa-0.7.15.tar.bz2 (fcf470a46a1dbe2f96a1c5b87c530554)

Download SlackBuild:
bwa.tar.gz
bwa.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:
README
References
bwa.SlackBuild
bwa.info
slack-desc

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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