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14.2 > Academic > fastqc (0.11.5)

FastQC: A quality control tool for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks
on raw sequence data coming from high throughput sequencing pipelines.
It provides a modular set of analyses which you can use to give a
quick impression of whether your data has any problems of which you
should be aware before doing any further analysis.

The main functions of FastQC are

- Import of data from BAM, SAM or FastQ files (any variant)
- Providing a quick overview to tell you in which areas there may be
problems
- Summary graphs and tables to quickly assess your data
- Export of results to an HTML based permanent report
- Offline operation to allow automated generation of reports without
running the interactive application

This requires: jdk

Maintained by: Petar Petrov
Keywords: sequence,bam,sam,bioinformatics,dna

Homepage:
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Source Downloads:
fastqc_v0.11.5.zip (3524f101c0ab0bae77c7595983170a76)

Download SlackBuild:
fastqc.tar.gz
fastqc.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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