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14.2 > Academic > fastqc (0.11.5)

FastQC: A quality control tool for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks
on raw sequence data coming from high throughput sequencing pipelines.
It provides a modular set of analyses which you can use to give a
quick impression of whether your data has any problems of which you
should be aware before doing any further analysis.

The main functions of FastQC are

- Import of data from BAM, SAM or FastQ files (any variant)
- Providing a quick overview to tell you in which areas there may be
problems
- Summary graphs and tables to quickly assess your data
- Export of results to an HTML based permanent report
- Offline operation to allow automated generation of reports without
running the interactive application

This requires: jdk

Maintained by: Petar Petrov
Keywords: sequence,bam,sam,bioinformatics,dna

Homepage:
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Source Downloads:
fastqc_v0.11.5.zip (3524f101c0ab0bae77c7595983170a76)

Download SlackBuild:
fastqc.tar.gz
fastqc.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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