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14.2 > Academic > flexbar (3.0.3)

The program Flexbar preprocesses high-throughput sequencing data 
efficiently. It demultiplexes barcoded runs and removes adapter
sequences. Moreover, trimming and filtering features are provided.
Flexbar increases read mapping rates and improves genome as well as
transcriptome assemblies. It supports next-generation sequencing data
in fasta and fastq format, e.g. from Roche 454 and the Illumina
platform.

The script downloads the segan-library needed for compilation.

References

Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017.

Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich:
Flexbar - flexible barcode and adapter processing for next-generation
sequencing platforms. Biology 2012.

This requires: tbb

Maintained by: Rob van Nues
Keywords: adapter-removal
ChangeLog: flexbar

Homepage:
https://github.com/seqan/flexbar

Source Downloads:
flexbar-3.0.3.tar.gz (16bbdc3eb89a82f9879655e33c147451)
seqan-library-2.2.0.tar.xz (0070e035ac84c3c128b0e8dd2737b2d3)

Download SlackBuild:
flexbar.tar.gz
flexbar.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:
README
flexbar.SlackBuild
flexbar.info
slack-desc

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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