SlackBuilds Repository

14.2 > Academic > jellyfish_k-mer (1.1.12)

Jellyfish is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences of
all such substrings is a central step in many analyses of DNA sequence.
Jellyfish can count k-mers quickly by using an efficient encoding of a
hash table and by exploiting the "compare-and-swap" CPU instruction to
increase parallelism.

Jellyfish is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an binary
format, which can be translated into a human-readable text format using
the "jellyfish dump" command. See the documentation below for more
details.

Maintained by: Petar Petrov
Keywords: k-mers,DNA
ChangeLog: jellyfish_k-mer

Homepage:
http://www.genome.umd.edu/jellyfish.html

Source Downloads:
jellyfish-1.1.12.tar.gz (175e6fc48ca0b4ba845614cdb4467387)

Download SlackBuild:
jellyfish_k-mer.tar.gz
jellyfish_k-mer.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

© 2006-2019 SlackBuilds.org Project. All rights reserved.
Slackware® is a registered trademark of Patrick Volkerding
Linux® is a registered trademark of Linus Torvalds
Web Design by WebSight Designs |  Managed Hosting by OnyxLight Communications