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14.2 > Academic > ncbi-rmblastn (2.2.28)

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.

RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:

- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
(Cross_match is Phil Green's seeded smith-waterman search algorithm:
www.phrap.org )
- Support for cross_match-like masklevel filtering.

This requires: ncbi-blast-plus

Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence,blast,ncbi,repeatmasker
ChangeLog: ncbi-rmblastn

Homepage:
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/

Source Downloads (32bit):
ncbi-rmblastn-2.2.28-ia32-linux.tar.gz (9e78451a710b668d81e5cd8573fa7303)

Source Downloads (64bit):
ncbi-rmblastn-2.2.28-x64-linux.tar.gz (b668b3c5869cd7cdde5d44463c8417f9)

Download SlackBuild:
ncbi-rmblastn.tar.gz
ncbi-rmblastn.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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