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14.2 > Academic > spades (3.11.1)

SPAdes: a single-cell genome assembler

SPAdes (St. Petersburg genome assembler) is intended for both standard
isolates and single-cell MDA bacteria assemblies.

SPAdes generates single-cell assemblies, providing information about
genomes of uncultivatable bacteria that vastly exceeds what may be
obtained via traditional metagenomics studies.

Citing:
Nurk S et al. Assembling Single-Cell Genomes and Mini-Metagenomes From
Chimeric MDA Products. Journal of Computational Biology 20(10) (2013),
714-737. doi:10.1089/cmb.2013.0084

NOTE: This will not build on a 32bit system.

Maintained by: Petar Petrov
Keywords: genome,assembler,dna,bioinformatics

Homepage:
http://bioinf.spbau.ru/en/spades

Source Downloads (64bit):
SPAdes-3.11.1.tar.gz (478677b560e2f98db025e8efd5245cdf)

Download SlackBuild:
spades.tar.gz
spades.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:
README
References
slack-desc
spades.SlackBuild
spades.info

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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