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14.2 > Academic > stringtie (1.3.5)

StringTie is a fast and highly efficient assembler of RNA-Seq
alignments into potential transcripts. It uses a novel network flow
algorithm as well as an optional de novo assembly step to assemble and
quantitate full-length transcripts representing multiple splice
variants for each gene locus. Its input can include not only the
alignments of raw reads used by other transcript assemblers, but also
alignments longer sequences that have been assembled from those reads.

In order to identify differentially expressed genes between
experiments, StringTie's output can be processed by specialized
software like Ballgown, Cuffdiff or other programs (DESeq2, edgeR).

Maintained by: Petar Petrov
Keywords: RNA-Seq,alignment
ChangeLog: stringtie

Homepage:
http://ccb.jhu.edu/software/stringtie/

Source Downloads:
stringtie-1.3.5.tar.gz (64e5a271dd1b4408728c5f16ce1222ff)

Download SlackBuild:
stringtie.tar.gz
stringtie.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:
README
slack-desc
stringtie.SlackBuild
stringtie.info

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

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ftp git cgit http rsync

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