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14.2 > Academic > trfind (4.09)

Tandem repeats finder: a program to analyze DNA sequences

A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format.

Example usage:
trf hg38.fasta 2 5 7 80 10 50 2000 -l 6

LICENSE:
Please read the License Terms before downloading:
https://tandem.bu.edu/trf/trf.license.html

Please cite:
G. Benson "Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.

Maintained by: Petar Petrov
Keywords: tandem repeats finder,dna,sequence,repeat
ChangeLog: trfind

Homepage:
https://tandem.bu.edu/trf/trf.html

Source Downloads (32bit):
trf409.linux32 (285478f16f417d6e9c9700f556373e43)

Source Downloads (64bit):
trf409.linux64 (0c594fe666e0332db1df9d160d7fabc8)

Download SlackBuild:
trfind.tar.gz
trfind.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:
LICENSE
README
References
slack-desc
trfind.SlackBuild
trfind.info

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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