SlackBuilds Repository

14.2 > Academic > seaview (5.0.4)

SeaView is a multiplatform, graphical user interface for multiple
sequence alignment and molecular phylogeny. Features:

- Reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
trees.
- Drives programs muscle or Clustal Omega for multiple sequence
alignment, and also allows to use any external alignment
algorithm able to read and write FASTA-formatted files.
- Drives the Gblocks program to select blocks of evolutionarily
conserved sites.
- Computes phylogenetic trees by parsimony, using PHYLIP's dnapars /
protpars algorithm, distance, with NJ or BioNJ algorithms on a variety
of evolutionary distances, maximum likelihood, driving program PhyML
- Can use the Transfer Bootstrap Expectation method to compute the
bootstrap support of PhyML and distance trees.
- Uses the Treerecs method to reconcile gene and species trees.
- Prints and draws phylogenetic trees on screen, SVG, PDF or PostScript
files.
- Allows to download sequences from EMBL / GenBank / UniProt.

For details and citation:
Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
multiplatform graphical user interface for sequence alignment and
phylogenetic tree building. Molecular Biology and Evolution
27(2):221-224.

This requires: Gblocks, PDFlib-Lite, clustalo, fltk, muscle, PhyML, treerecs

Maintained by: Petar Petrov
Keywords: seaview,sequences,alignment,phylogeny,biology,bioinformatics
ChangeLog: seaview

Homepage:
http://doua.prabi.fr/software/seaview/

Source Downloads:
seaview_5.0.4.tar.gz (8b36176fb98a508e483285966ad7100c)

Download SlackBuild:
seaview.tar.gz
seaview.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 14.2

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

© 2006-2021 SlackBuilds.org Project. All rights reserved.
Slackware® is a registered trademark of Patrick Volkerding
Linux® is a registered trademark of Linus Torvalds