SlackBuilds Repository

15.0 > Academic > archaeopteryx (0.9928b)

Archaeopteryx: visualise, analyse and edit phylogenetic trees

Archaeopteryx is a software tool for the visualization, analysis, and
editing of potentially large and highly annotated phylogenetic trees.
Archaeopteryx (the successor to ATV) is entirely written in the Java
programming language and is based on the forester libraries.

Check /usr/share/archaeopteryx for an example configuration file (called
'_aptx_configuration_file.txt' or get one from the program's web-site).

For more configuration files and examples, visit the program's web-page
and this Dropbox link:

Please cite:
Han M.V. and Zmasek C.M. (2009)
phyloXML: XML for evolutionary biology and comparative genomics
BMC Bioinformatics, 10:356.

This requires: zulu-openjdk11

Maintained by: Petar Petrov
Keywords: phylogeny,biology,sequence,phylogenetic tree
ChangeLog: archaeopteryx


Source Downloads:
forester_1050.jar (023de2f0a48cbd236c5054fe839b1d72)

Download SlackBuild:
archaeopteryx.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 15.0

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

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