RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.
RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:
- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
(Cross_match is Phil Green's seeded smith-waterman search algorithm:
www.phrap.org )
- Support for cross_match-like masklevel filtering.
This requires: ncbi-blast+
Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence,blast,ncbi,repeatmasker
ChangeLog: ncbi-rmblastn
Homepage:
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/
Download SlackBuild:
ncbi-rmblastn.tar.gz
ncbi-rmblastn.tar.gz.asc (FAQ)
(the SlackBuild does not include the source)
Individual Files: |
README |
ncbi-rmblastn.SlackBuild |
ncbi-rmblastn.info |
slack-desc |
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