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15.0 > Academic > ncbi-rmblastn (2.2.28)

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.

RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:

- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
(Cross_match is Phil Green's seeded smith-waterman search algorithm:
www.phrap.org )
- Support for cross_match-like masklevel filtering.

This requires: ncbi-blast+

Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence,blast,ncbi,repeatmasker
ChangeLog: ncbi-rmblastn

Homepage:
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/rmblast/

Source Downloads (32bit):
ncbi-rmblastn-2.2.28-ia32-linux.tar.gz (9e78451a710b668d81e5cd8573fa7303)

Source Downloads (64bit):
ncbi-rmblastn-2.2.28-x64-linux.tar.gz (b668b3c5869cd7cdde5d44463c8417f9)

Download SlackBuild:
ncbi-rmblastn.tar.gz
ncbi-rmblastn.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Validated for Slackware 15.0

See our HOWTO for instructions on how to use the contents of this repository.

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ftp git cgit http rsync

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