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15.0 > Academic > ncbi-rmblastn (2.2.28)

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.

RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:

- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
  (Cross_match is Phil Green's seeded smith-waterman search algorithm:
   www.phrap.org )
- Support for cross_match-like masklevel filtering.

This requires: ncbi-blast+

Maintained by: Petar Petrov
Keywords: bioinformatics,alignment,sequence,blast,ncbi,repeatmasker
ChangeLog: ncbi-rmblastn