SlackBuilds Repository

15.0 > Academic > stringtie (1.3.6)

StringTie is a fast and highly efficient assembler of RNA-Seq
alignments into potential transcripts. It uses a novel network flow
algorithm as well as an optional de novo assembly step to assemble and
quantitate full-length transcripts representing multiple splice
variants for each gene locus. Its input can include not only the
alignments of raw reads used by other transcript assemblers, but also
alignments longer sequences that have been assembled from those reads.

In order to identify differentially expressed genes between
experiments, StringTie's output can be processed by specialized
software like Ballgown, Cuffdiff or other programs (DESeq2, edgeR).

Maintained by: Petar Petrov
Keywords: RNA-Seq,alignment
ChangeLog: stringtie


Source Downloads:
stringtie-1.3.6.tar.gz (ac94323cb300e90b02bc82bc27e50a2f)

Download SlackBuild:
stringtie.tar.gz.asc (FAQ)

(the SlackBuild does not include the source)

Individual Files:

Validated for Slackware 15.0

See our HOWTO for instructions on how to use the contents of this repository.

Access to the repository is available via:
ftp git cgit http rsync

© 2006-2023 Project. All rights reserved.
Slackware® is a registered trademark of Patrick Volkerding
Linux® is a registered trademark of Linus Torvalds